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2013
Chavez-Dozal A, Gorman C, Erken M, Steinberg PD, McDougald D, Nishiguchi MK. 2013. Predation Response of Vibrio fischeri Biofilms to Bacterivorus Protists. Appl Environ Microbiol. 2013 Jan;79(2):553-8.
Morris AR, Visick KL. 2013. The response regulator SypE controls biofilm formation and colonization through phosphorylation of the syp-encoded regulator SypA in Vibrio fischeri. Mol Microbiol. 2013 Feb;87(3):509-25.
Septer AN, Lyell NL, Stabb EV. 2013.The iron-dependent regulator Fur controls pheromone-signaling systems and luminescence in the squid symbiont Vibrio fischeri ES114. Appl Environ Microbiol. 2013 Jan 11.
Visick KL, Quirke KP, McEwen SM. 2013. Arabinose induces pellicle formation by Vibrio fischeri. Appl Environ Microbiol. 2013 Jan 18.
2012
Cao X, Studer SV, Wassarman K, Zhang
Y, Ruby EG, Miyashiro T. 2012. The Novel Sigma factor-like regulator
RpoQ controls luminescence, chitinase activity, and motility in
Vibrio fisheri. MBio, Jan 10, 3(1).
Collins AJ, LaBarre BA,
Won BS, Shah MV, Heng S, Choudhury MH, Haydar SA, Santiago J, Nyholm SV.
2012. Diversity and partitioning of bacterial populations within the
accessory nidamental gland of the squid Euprymna scolopes. Appl Environ
Microbiol. 2012 Jun;78(12):4200-8.
Collins AJ, Schleicher TR, Rader BA, Nyholm SV. 2012. Understanding the role of host hemocytes in a squid/vibrio symbiosis using transcriptomics and proteomics. Front Immunol. 2012;3:91.
Deloney-Marino CR, Visick KL. 2012. Role for cheR of Vibrio fischeri in the Vibrio-squid symbiosis. Can J. Microbiol. Jan 58(1):29-38.
Dunn AK. 2012. Vibrio fischeri
metabolism: symbiosis and beyond.
Adv Microb Physiol. 2012;61:37-68.
Fidopiastis
PM, Rader BA, Gerling DG, Gutierrez NA, Watkins KH, Frey MW, Nyholm SV,
Whistler CA. 2012. Characterization of a Vibrio fischeri aminopeptidase and
evidence for its influence on an early stage of squid colonization. J
Bacteriol. 2012 Aug;194(15):3995-4002.
Gyllborg M, Sahl JW, Cronin DC
3rd, Rasko DA, Mandel MJ. 2012. Draft genome of Vibrio fischeri SR5,
a Strain Isolated from the light organ of the Mediterranean squid
Sepiola robusta. J. Bacteriol. Mar 194(6):1639.
Hentschel U, Weis VM, McFall-Ngai MJ. 2012. Biological bulletin virtual
symposium: discoveries in animal symbiosis in the “omics” age. Biol Bull.
2012 Aug;223(1):5-6.
Mandel MJ, Schaefer
AL, Brennan CA, Heath-Heckman EA, Deloney-Marino CR, McFall-Ngai MJ, Ruby
EG. 2012. Squid-derived chitin oligosaccharides are a chemotactic signal
during colonization by Vibrio fischeri. Appl Environ Microbiol. 2012
Jul;78(13):4620-6.
McFall-Ngai M, Heath-Heckman EA, Gilette AA, Peyer SM, Harvie EA. 2012. The Secret Language of coevolved symbioses: Insights from the Euprymna scolopes-Vibrio fischeri symbiosis. Semin. Immunol. Feb 24(1): 3-8.
Miyashiro T, Ruby EG. 2012. Shedding light on bioluminescence regulation in Vibrio fischeri. Mol Microbiol. 2012 Jun;84(5):795-806.
Naughton LM, Mandel MJ. 2012. Colonization of Euprymna scolopes Squid by Vibrio fischeri. J. Vis. Exp. March 1, (61).
Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson BW, Apicella MA. 2012. O-antigens and Core Carbohydrate of Vibrio fischeri Lipopolysaccharide: Composition and Analysis of their Roles in Euprymna scolopes light organ colonization. J. Biol. Chem. March 9, 287(11): 8515-8530.
Rader BA, Kremer N, Apicella MA, Goldman WE,
McFall-Ngai MJ. 2012.Modulation of symbiont lipid A signaling by host
alkaline phosphatases in the squid-vibrio symbiosis. MBio. 2012 May 1;3(3).
Rader BA, Nyholm SV. 2012. Host/microbe
interactions revealed through "omics" in the symbiosis between the Hawaiian
bobtail squid Euprymna scolopes and the bioluminescent bacterium Vibrio
fischeri. Biol Bull. 2012 Aug;223(1):103-11.
Ray VA, Morris AR, Visick KL. 2012. A
semi-quantitative approach to assess biofilm formation using wrinkled colony
development. J Vis Exp. 2012 Jun 7;(64):e4035. doi: 10.3791/4035.
Ray VA, Visick KL. 2012. LuxU connects quorum sensing to biofilm formation in Vibrio fischeri. Mol Microbiol. 2012 Oct 5.
Septer
AN, Stabb EV. 2012. Coordination of the arc regulatory system and
pheromone-mediated positive feedback in controlling the Vibrio fischeri lux
operon. PLoS One. 2012;7(11):e49590.
Shibata S, Visick KL. 2012.
Sensor kinase RscS induces the production of antigenetically
distinct outer membrane vesicles that depend ont he symbiosis
polysaccaraide locus in Vibrio fischeri. J. Bacteriol. Jan
194(1):185-194.
Shibata S, Yip ES, Quirke KP, Ondrey JM, Visick KL. 2012. Roles of the structural symbiosis polysaccharide (syp) genes in host colonization, biofilm formation, and polysaccharide biosynthesis in Vibrio fischeri. J Bacteriol. 2012 Dec;194(24):6736-47.
Soto, W., E.B. Punke, and M. K. Nishiguchi. 2012. Evolutionary perspectives in a mutualism of sepiolid squid and bioluminescent bacteria: Combined usage of microbial experimentalevolution and temporal population genetics. Evolution 66:1308-1321.
Wollenberg MS, Preheim SP, POlz MF, Ruby EG. 2012. Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion. Environ. Microbiol. Mar 14(3):655-668.
Wollenberg MS, Ruby EG. 2012. Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations. ISME J. Feb 6(2):352-362.
Wollesen T, Nishiguchi MK, Seixas P, Degnan BM, Wanninger A. 2012. The VD(1)/RPD(2) alpha1-neuropeptide is highly expressed in the brain of cephalopod mollusks. Cell Tissue Res. March 20. [Epub ahead of print]
2011
Altura MA, Stabb E, Goldman W, Apicella M, McFall-Ngai MJ. 2011. Attenuation of Host NO Production by MAMPs Potentiates Development of the Host in the Squid-Vibrio Symbiosis. Cell Microbiol. Apr 13(4): 527-537.
Archetti M. 2011. Contract theory for the evolution of cooperation: The right incentives attract the right partners. J. Theor. Biol. Jan 21, 269(1): 201-207.
Archetti M, Ubeda F, Fudenberg D, Green J, Pierce NE, Yu DW. 2011. Let the right one in: a microeconomic approach to partner choice in mutualisms. Am. Nat. Jan 177(1):75-85.
Bosch TC, McFall-Ngai MJ. 2011. Metaorganisms as the new frontier. Zoology (Jena), Sep 114 (4): 185-190.
Bose JL, Wollenberg MS, Colton DM, Mandel MJ, Septer AN, Dunn AK, Stabb EV. 2011. Contribution of rapid evolution of the luxR-luxI intergentic region to the diverse bioluminescence outputs of Vibrio fischeri strains isolated from different environments. Appl. Environ. Microbiol. Apr 77(7):2445-2457.
Collins AJ, Nyholm SV. 2011. Draft genome of Phaeobacter gallacciensuis ANG1, a dominant member of the accessory nidamental gland of Eupryman scolopes. J. Bacteriol. Jul 193(13):3392-3398.
Guerrero-Ferreira, R.C. and M.K. Nishiguchi. 2011. Bacterial biodiversity in natural environments. In: J. López-Pujol (ed), Biodiversity/ Book 3. In Tech, Open access publisher.
Heath-Heckman EA, McFall-Ngai MJ. 2011. The occurrance of chitin in the hemocytes of invertebrates. Zoology (Jena) Sep 114 (4): 191-198
Krasity BC, Troll JV, Weiss JP, McFall-Ngai MJ. 2011. LBP/BPI proteins and their relatives: conservation over evolution and roles in mutualism. Biochem. Soc. Trans. Aug 39(4): 1039-1044.
Miyashiro T, Klein W, Oehlert D, Cao X, Schwartzmann J, Ruby EG. 2011. The N-acetyl-D-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes. Mol. Microbiol. Nov 82(4):894-903.
Morris AR, Darnell CL, Visick KL. 2011. Inactivation of a novel response regulator is neccessary for biofilm formation and host colonization by Vibrio fischeri. Mol. Microbiol. Oct 82(1): 144-130.
Phillips NJ, Adin DM, Stabb EV, McFall-Ngai MJ, Apicella MA, Gibson BW. 2011. The lipid A from Vibrio fischeri lipopolysaccharide: a unique structure bearing a phosphoglycerol moiety. J. Biol. Chem. Jun 17: 286 (24): 21203-21219
Septer AN, Wang Y, Ruby EG, Stabb EV, Dunn AK. 2011. The Haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization. Environ. Microbiol. Nov 13(11):2855-2864.
Schleicher TR, Nyholm SV. 2011. Characterizing the host and symbiont proteomes in the association between the Bobtail squid, Euprymna scolopes, and the bacterium, Vibrio fischeri. PLoS One 6(10): e25649.
Wang, Yanling and Edward Ruby. 2011. The roles of NO in microbial symbioses. Cell Microbiol. Jan 25. doi: 10.1111/j.1462-5822.2011.01576.x. [Epub ahead of print]
2010
Bassis, Christine, and Karen Visick. 2010. The Cyclic-di-GMP Phosphodiesterase BinA Negatively Regulates Cellulose-Containing Biofilms in Vibrio Fischeri. Journal of Bacteriology. 192, no. 5: 1269-1278.
Chaston, J, and H Goodrich-Blair. 2010. Common Trends in Mutualism Revealed by Model Associations Between Invertebrates and Bacteria. Fems Microbiology Reviews. 34, no. 1: 41-58.
Collins AJ, Nyholm SV. Obtaining hemocytes from the
Hawaiian bobtail squid Euprymna scolopes and observing their adherence to
symbiotic and non-symbiotic bacteria. J Vis Exp.
2010 Feb 11;(36).
Dunn, AK, EA Karr, YL Wang, AR Batton, EG Ruby, and EV Stabb. 2010. The Alternative Oxidase (AOX) Gene in Vibrio Fischeri is Controlled by NsrR and Upregulated in Response to Nitric Oxide. Molecular Microbiology. 77, no. 1: 44-55.
Guerrero-Ferreira
RC, Nishiguchi MK. Differential gene expression in bacterial symbionts from
loliginid squids demonstrates variation between mutualistic and
environmental niches. Environ Microbiol Rep.
2010 Aug 1;2(4):514-523.
Hagen, Stephen, Minjun Son, Joel Weiss, and Jonathan Young. 2010. Bacterium in a Box: Sensing of Quorum and Environment by the LuxI/LuxR Gene Regulatory Circuit. Journal of Biological Physics. 36, no. 3: 317-327.
Izumi, M, AM Sweeney, D DeMartini, JC Weaver, ML Powers, A Tao, TV Silvas, RM Kramer, WJ Crookes-Goodson, LM Mathger, RR Naik, RT Hanlon, and DE Morse. 2010. Changes in Reflectin Protein Phosphorylation Are Associated with Dynamic Iridescence in Squid. Journal of the Royal Society Interface. 7, no. 44: 549-560.
Lyell NL, Dunn AK, Bose JL, Stabb EV. Bright mutants of Vibrio fischeri ES114 reveal conditions and regulators that control bioluminescence and expression of the lux operon. J Bacteriol. 2010 Oct;192(19):5103-14.
Mahoney JC, Gerding MJ, Jones SH, Whistler CA. Characterization of the pathogenic potential of environmental Vibrio parahaemolyticus compared to clinical strains indicates a role for temperature regulation in virulence. Appl Environ Microbiol. 2010 Oct 1.
Mandel MJ. Models and approaches to dissect host-symbiont specificity. Trends Microbiol. 2010 Aug 20.
McFall-Ngai, Margaret, Spencer Nyholm, and Maria Castillo. 2010. The Role of the Immune System in the Initiation and Persistence of the Euprymna Scolopes-Vibrio Fischeri Symbiosis. Seminars in Immunology. 22, no. 1: 48-53.
Miyashiro, T, MS Wollenberg, X Cao, D Oehlert, EG Ruby. 2010. A single qrr gene is necessary and sufficient for LuxO-mediated regulation in Vibrio fischeri.Molecular Microbiology. In press.
Melke, P, P Sahlin, A Levchenko, and H Jonsson. 2010. A Cell-Based Model for Quorum Sensing in Heterogeneous Bacterial Colonies. Plos Computational Biology. 6, no. 6: .
Morris AR, Visick KL. Control of biofilm formation and colonization in Vibrio fischeri: a role for partner switching? Environ Microbiol. 2010 Jun 9.
Nodl, MT, and HG De Couet. 2010. A Conserved Role of the Homeobox Transcription Factor Tinman During Heart Development of the Bobtail Squid Euprymna Scolopes. Integrative and Comparative Biology. 50, no. 192007435: E273.
Nodl, MT, CB Farfan, and HG De Couet. 2010. Wnt Signaling and Appendage Development in the Sepiolid Squid Euprymna Scolopes. Integrative and Comparative Biology. 50, no. 192007435: E125.
Pollack-Berti, Amber, Michael S. Wollenberg, Edward G. Ruby. 2010. Natural transformation of Vibrio fischeri requires tfoX and tfoY. Environmental Microbiology. In Press.
Schuster, Brian, Lauren Perry, Vaughn Cooper, and Cheryl Whistler. 2010. Breaking the language barrier: experimental evolution of non-native Vibrio fischeri in squid tailors luminescence to the host. Symbiosis (2010) 51: 85-96.
Septer, Alecia, Jeffrey Bose, Anne Dunn, and Eric Stabb. 2010. FNR-mediated Regulation of Bioluminescence and Anaerobic Respiration in the Light-organ Symbiont Vibrio Fischeri. FEMS Microbiology Letters. 306, no. 1: 72-81.
Sinn, DL, NA Moltschaniwskyj, E Wapstra, and SRX Dall. 2010. Are Behavioral Syndromes Invariant? Spatiotemporal Variation in Shy/bold Behavior in Squid. Behavioral Ecology and Sociobiology. 64, no. 4: 693-702.
Spiro, Stephen. 2010. An Alternative Route to Nitric Oxide Resistance. Molecular Microbiology. 77, no. 1: 6-10.
Wang, YL, YS Dufour, HK Carlson, TJ Donohue, MA Marletta, and EG Ruby. 2010. H-NOX-mediated Nitric Oxide Sensing Modulates Symbiotic Colonization by Vibrio Fischeri. Proceedings of the National Academy of Sciences of the United States of America. 107, no. 18: 8375-8380.
Wang,YL, AK Dunn, J Wilneff, MJ McFall-Ngai, S Spiro, and EG Ruby. 2010. Vibrio fischeri flavohemoglobin protects against nitric oxide during initiation of the squid-Vibrio symbiosis. Mol Microbiol. Nov 78(4):903-915.
Wier, AM, SV Nyholm, MJ Mandel, RP Massengo-Tiasse, AL Schaefer, I Koroleva, S Splinter-BonDurant, B Brown, L Manzella, E Snir, H Almabrazi, TE Scheetz, MD Bonaldo, TL Casavant, MB Soares, JE Cronan, JL Reed, EG Ruby, and MJ McFall-Ngai. 2010. Transcriptional Patterns in Both Host and Bacterium Underlie a Daily Rhythm of Anatomical and Metabolic Change in a Beneficial Symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 107, no. 5: 2259-2264.
2009
Adin, Dawn M, Jacquelyn T Engle, William E Goldman, Margaret J McFall-Ngai, and Eric V Stabb. 2009. Mutations in AmpG and Lytic Transglycosylase Genes Affect the Net Release of Peptidoglycan Monomers from Vibrio Fischeri. Journal of Bacteriology. 191, no. 7: 2012.
Ariyakumar DS, Nishiguchi MK.Characterization of two host-specific genes, mannose-sensitive hemagglutinin (mshA) and uridyl phosphate dehydrogenase (UDPDH) that are involved in the Vibrio fischeri-Euprymna tasmanica mutualism. FEMS Microbiol Lett. 2009 Jul 18.
Carter, Chris, Kerri Lynch, and Natalie Moltschaniwskyj. 2009. Protein Synthesis in a Solitary Benthic Cephalopod, the Southern Dumpling Squid (Euprymna Tasmanica). Comparative Biochemistry & Physiology Part A: Molecular & Integrative Physiology. 153, no. 2: 185-190.
Castillo, M. G., M. S. Goodson, M. J. McFall-Ngai. 2009. Identification and molecular characterization of a complement-C3 molecule in a lophotrochozoan, the Hawaiian bobtail squid Eupyrmna scolopes. Dev. Comp. Immunol. 33:669-76.
Farfan, Claudia, Shuichi Shigeno, Marie-Therese Nodl, and H. Gert de Couet. 2009. Developmental Expression of Apterous/Lhx2/9 in the Sepiolid Squid Euprymna Scolopes Supports an Ancestral Role in Neural Development. Evolution & Development. 11, no. 4: 354-362.
Guerrero-Ferreira, RC, and MK Nishiguchi. 2009. Ultrastructure of Light Organs of Loliginid Squids and Their Bacterial Symbionts: A Novel Model System for the Study of Marine Symbioses. Vie Et Milieu-life and Environment. 59, no. 3-4: 307-313.
Handelsman, J, and MJ McFall-Ngai. 2009. Microbial Symbiosis: In Sickness and in Health. Dna and Cell Biology. 28, no. 8: 359-360.
Lee PN, McFall-Ngai MJ, Callaerts P, de Couet HG. 2009. The Hawaiian bobtail squid (Euprymna
scolopes): a model to study the molecular basis of
eukaryote-prokaryote mutualism and the development and evolution of
morphological novelties in cephalopods. Cold Spring Harb
Protoc. 2009 Nov 2009(11):
Lee PN, McFall-Ngai MJ, Callaerts P, de Couet HG. 2009. Preparation of genomic DNA from Hawaiian
bobtail squid (Euprymna scolopes) tissue by cesium chloride gradient
centrifugation.Cold Spring Harb Protoc. 2009 Nov
2009(11):
Lee
PN, McFall-Ngai MJ, Callaerts P, de Couet HG. 2009. Confocal immunocytochemistry of embryonic
and juvenile Hawaiian bobtail squid (Euprymna scolopes) tissues.
Cold Spring Harb Protoc. 2009 Nov 2009(11):
Lee PN, McFall-Ngai MJ, Callaerts P, de Couet HG. 2009. Whole-mount in situ hybridization of
Hawaiian bobtail squid (Euprymna scolopes) embryos with DIG-labeled
riboprobes: I. DNA template preparation and in vitro transcription
of riboprobes. Cold Spring Harb Protoc. 2009 Nov
2009(11):
Lee PN, McFall-Ngai MJ, Callaerts P, de Couet HG. 2009.Whole-mount in situ hybridization of Hawaiian bobtail squid (Euprymna scolopes) embryos with DIG-labeled riboprobes: II. Embryo preparation, hybridization, washes, and immunohistochemistry. Cold Spring Harb Protoc. 2009 Nov 2009(11):
Mandel, M. J., Michael S Wollenberg, Eric V Stabb, Karen L Visick, and Edward G Ruby. 2009. A Single Regulatory Gene is Sufficient to Alter Bacterial Host Range. Nature. 458, no. 7235: 215.
Nair V, Nishiguchi
MK. BIOLOGICAL PROPERTIES (IN VITRO) EXHIBITED BY FREE-LIVING AND SYMBIOTIC
VIBRIO ISOLATES. Vie Milieu Paris.
2009;59(3-4):277-285.
Nodl, Marie-Therese, and Heinz Gert De Couet. 2009. Wnt Gene Expression During Appendage Development of the Sepiolid Squid Euprymna Scolopes. Developmental Biology. 331, no. 2: 462-463.
Nyholm SV. Peptidoglycan monomer release and Vibrio fischeri. J Bacteriol. 2009 Apr;191(7):1997-9.
Nyholm, S. V., J. J. Stewart, E. G. Ruby, M. J. McFall-Ngai. 2009. Recognition between symbiotic Vibrio fischeri and the hemocytes ofEuprymna scolopes. Environ. Microbiol. 11:483-493.
Stabb, E.V. and D.S. Millikan. 2009. Is the Vibrio fischeri-Euprymna scolopes symbiosis a defensive mutualism? In J.F. White, Jr. and M.S. Torres (eds.), Defensive Mutualism in Microbial Symbiosis. Taylor and Francis, Boca Raton, pp. 85-98
Soto W, Gutierrez J, Remmenga MD, Nishiguchi MK. Salinity and temperature effects on physiological responses of Vibrio fischeri from diverse ecological niches. Microb Ecol. 2009 Jan;57(1):140-50.
Soto, W., C.P. Lostroh, and M.K. Nishiguchi. 2009. Physiological responses to stress in the Vibrionaceae: Aquatic microorganisms frequently affiliated with hosts. In: J. Seckbach and M. Grube (eds), Cooperation and stress in Biology, Springer, New York, NY.
Tong, Deyan, Natalia S Rozas, Todd H Oakley, Jane Mitchell, Nansi J Colley, and Margaret J McFall-Ngai. 2009. Evidence for Light Perception in a Bioluminescent Organ. Proceedings of the National Academy of Sciences of the United States of America. 106, no. 24: 9836.
Troll, J.V., Adin, D.M., Wier, A.M., Paquette, N., Silverman, N., Goldman, W.E., Stadermann, F.J., Stabb, E.V., and McFall-Ngai, M.J. (2009). Peptidoglycan induces loss of a nuclear peptidoglycan recognition protein during host tissue development in a beneficial animal-bacterial symbiosis. Cellular Microbiology. 11:1114-1127.
Troll, Joshua V, Eric H Bent, Nicholas Pacquette, Andrew M Wier, William E Goldman, Neal Silverman, and Margaret J McFall-Ngai. 2009. Taming the Symbiont for Coexistence: A Host PGRP Neutralizes a Bacterial Symbiont Toxin. Environ Microbiol.
Visick, KL. 2009. An Intricate Network of Regulators Controls Biofilm Formation and Colonization by Vibrio Fischeri. Molecular Microbiology. 74, no. 4: 782-789.
Wollenberg, M. S., E. G. Ruby. 2009. Population structure of Vibrio fischeri within the light organs of Euprymna scolopes from two different host populations. Appl. Environ. Microbiol. 75:193-202.
Yildiz, Fitnat, and Karen Visick. 2009. Vibrio Biofilms: So Much the Same Yet So Different. Trends in Microbiology. 17, no. 3: 109-118.
Adin , D. M., N. J. Phillips, B. W. Gibson, M. A. Apicella, E. G. Ruby, M. J. McFall-Ngai, D. B. Hall, E.V. Stabb. 2008. Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri. Appl. Environ. Microbiol, 74:633-44.
Adin, DM, KL Visick, and EV Stabb. 2008. Identification of a Cellobiose Utilization Gene Cluster with Cryptic Beta-galactosidase Activity in Vibrio Fischeri. Applied and Environmental Microbiology. 74, no. 13: 4059-4069.
Bose JL, Rosenberg CS,
Stabb EV. Effects of
luxCDABEG induction in Vibrio fischeri: enhancement of symbiotic
colonization and conditional attenuation of growth in culture. Arch
Microbiol. 2008 Aug;190(2):169-83.
Browne-Silva J,
Nishiguchi MK. Gene sequences of the pil operon reveal relationships between
symbiotic strains of Vibrio fischeri. Int J Syst Evol
Microbiol. 2008 Jun;58(Pt 6):1292-9.
Chun, C. K., J. V. Troll, I. Koroleva, B. Brown, L. Manzella, E. Snir, H. Almabrazi, T. E. Scheetz, M. Bonaldo, T. L. Casavant, M. B. Soares, E. G. Ruby, M. J. McFall-Ngai. 2008. Effects of colonization, luminescence and autoinducer on global host transcription in the developing squid-vibrio symbiosis. Proc. Natl. Acad. Sci. USA 105:11323-11328.
Darnell CL, Hussa EA, Visick KL.
The putative hybrid sensor kinase SypF coordinates biofilm formation in
Vibrio fischeri by acting upstream of two response regulators, SypG and
VpsR. J Bacteriol. 2008 Jul;190(14):4941-50.
Dunn AK, Stabb EV.
Genetic analysis of trimethylamine N-oxide reductases in the light organ
symbiont Vibrio fischeri ES114. J Bacteriol. 2008
Sep;190(17):5814-23.
Dunn AK, Stabb EV. The twin arginine translocation
system contributes to symbiotic colonization of Euprymna scolopes by Vibrio
fischeri. FEMS Microbiol Lett.
2008 Feb;279(2):251-8.
Geszvain K, Visick KL.
The hybrid sensor kinase RscS integrates positive and negative signals to
modulate biofilm formation in Vibrio fischeri. J Bacteriol. 2008
Jul;190(13):4437-46.
Geszvain K, Visick KL.
Multiple factors contribute to keeping levels of the symbiosis regulator
RscS low. FEMS Microbiol Lett. 2008 Aug;285(1):33-9.
Hussa EA, Darnell CL, Visick KL.
RscS functions upstream of SypG to control the syp locus and biofilm
formation in Vibrio fischeri. J Bacteriol. 2008 Jul;190(13):4576-83.
Lyell NL, Dunn
AK, Bose JL, Vescovi SL, Stabb EV. Effective mutagenesis of Vibrio fischeri
by using hyperactive mini-Tn5 derivatives. Appl Environ
Microbiol. 2008 Nov;74(22):7059-63.
Mandel, M. J., E. V. Stabb, E. G. Ruby. 2008. Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artifactual expansions. BMC Genomics, 9:138.
McFall-Ngai, M. J. 2008. Quick Guide: The Hawaiian Bobtail Squid. Curr. Biol. 18: R1043-R1044.
McFall-Ngai, M. J. 2008. Are Biologists in 'Future Shock'? Symbiosis integrates biology across Domains. Nat. Rev. Microbiol. 6:789-792.
Nyholm SV,
Nishiguchi MK. THE EVOLUTIONARY ECOLOGY OF A SEPIOLID SQUID-VIBRIO
ASSOCIATION: FROM CELL TO ENVIRONMENT. Vie Milieu Paris.
2008;58(2):175-184.
Ruby, E. G. 2008. Symbiotic conversations are revealed under genetic interrogation. Nat. Rev. Microbiol., 6:752-762.
Stabb, E. V., A. Schaefer, J. Bose, E. G. Ruby. 2008. Quorum signaling and symbiosis in the marine luminous bacterium Vibrio fischeri. Chemical Communication among Bacteria. SC Winans and B Bassler, eds. pp. 233-250, ASM Press, Washington, DC.
Studer, S. V., M. J. Mandel, E. G. Ruby. 2008. AinS quorum sensing regulates the Vibrio fischeri acetate switch. J. Bacteriol., 190:5915-5923.
Wolfe AJ, Visick KL.
Get the message out: cyclic-Di-GMP regulates multiple levels of
flagellum-based motility. J Bacteriol. 2008 Jan;190(2):463-75.
Antunes, L. C., A. L. Schaefer, R. B. Ferreira, N. Qin, A. M. Stevens, E. G. Ruby, E. P. Greenberg. 2007. Transcriptome analysis of the Vibrio fischeri LuxR-LuxI regulon. J. Bacteriol., 189:8387-8391.
Bose JL, Kim U, Bartkowski
W, Gunsalus RP, Overley AM, Lyell NL, Visick KL, Stabb EV.
Bioluminescence in Vibrio fischeri is controlled by the redox-responsive
regulator ArcA. Mol Microbiol. 2007 Jul;65(2):538-53.
Dethlefsen, L., M. J. McFall-Ngai, D. A. Relman 2007. An ecological and evolutionary perspective on human-microbe mutualism and disease. Invited Insight Nature, 449:811-818.
Dunlap, P. V., Ast, J. C., Kimura, S., Fukui, A., Yoshino, T., and H. Endo. 2007. Phylogenetic analysis of host-symbiont specificity and codivergence in bioluminescent symbioses. Cladistics, 23:507-532.
Dunn AK, Stabb EV.
Beyond quorum sensing: the complexities of prokaryotic parliamentary
procedures. Anal Bioanal Chem. 2007 Jan;387(2):391-8.
Guerrero-Ferreira, R. C. and M. K. Nishiguchi. 2007. Identification of light organ symbionts from the genera Uroteuthis, Loliolus, and Euprymna. (Mollusca: Cephalopoda). Cladistics, 23:497-506.
Hussa, E. A., T. M. O'Shea, C. L. Darnell, E. G. Ruby, K. L. Visick. 2007. Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization. J. Bacteriol., 189:5825-5838.
Jones, B. W., Maruyama, A., Ouverney, C. C., and M. K. Nishiguchi. 2007. Spatial and temporal distribution of the Vibrionaceae in coastal waters of Hawaii, Australia, and France. Microb. Ecol., 54:314-323.
Koropatnick, T. A., J. R. Kimbell, M. J. McFall-Ngai. 2007. Responses of Host Hemocytes During the Initiation of the Squid-Vibrio Symbiosis. Biol. Bull, 212:29-39.
McFall-Ngai, M. J. 2007. Care for the community: A memory-based immune system may have evolved in vertebrates because of the need to recognize and manage complex communities of beneficial microbes. Commissioned "Concept" paper, Nature, 445:153.
McFall-Ngai, M. J. 2007. The squid-vibrio association: A naturally occurring experimental model of animal-bacterial partnerships. GI Microbiota and Regulation of the Immune System. G Huffnagle and M Noverr, eds. Landes Bioscience Press, Austin, TX.
McFall-Ngai, M. J., V. de Lorenzo. 2007. The ultimate rendezvous: microbial ecology meets industrial microbiology. Curr. Opin. Microbiol, 10:205-206.
Moltschaniskyj, N., K. Hall, M. Lipinski, J.E. Marian, V. Miske, M. Nishiguchi, M. Sakai, D. Shulman, B. Sinclair, D. Sinn, M. Staudinger, R. Villanueva, and K. Warnke. 2007. Ethical considerations of cephalopods as experimental animals. Rev. Fish Biol. Fisheries 17: 455-476.
Nelson, E. J., H. S. Tunsjø, P. M. Fidopiastis, H. Sørum, E. G. Ruby. 2007. A novel lux operon in the cryptically bioluminescent fish pathogen Vibrio salmonicida is associated with virulence. Appl. Environ. Microbiol., 73:1825-1833.
Strugnell, J. & M.K. Nishiguchi. 2007. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment and analysis methods. J. Mollusc. Stud. 73: 393-398.
Urbanczyk, H., Ast, J. C., Higgins, M. J., Carson, J., and P. V. Dunlap. 2007. Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov. Int. J. Syst. Evol. Microbiol., 57:2823-2829.
Visick KL, O'Shea TM, Klein AH, Geszvain
K, Wolfe AJ. The sugar phosphotransferase system of
Vibrio fischeri inhibits both motility and bioluminescence. J
Bacteriol. 2007 Mar;189(6):2571-4.
Whistler, C. A., T. A. Koropatnick, A. Pollack, M. J. McFall-Ngai, E. G. Ruby. 2007. The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization. Cellul. Microbiol., 9:766-778.
Chun, C. K., T. E. Scheetz, M. de Fatima Bonaldo, B. Brown, A. Clemens, W. J. Crookes-Goodson, K. Crouch, T. DeMartini, M. Eyestone, M. S. Goodson, B. Janssens, J. L Kimbell, T. A. Koropatnick, T. Kucaba, C. Smith, J. J. Stewart, D. Tong, J. V. Troll, S. Webster, J. Winhall-Rice, C. Yap, T. L. Casavant, M. J. McFall-Ngai, M. B. Soares. 2006. An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri. BMC Genomics, 7:154.
Cloud-Hansen, K. A., S. B. Peterson, E. V. Stabb, W. E. Goldman, M. J. McFall-Ngai, J. Handelsman. 2006. Breaching the great wall: peptidoglycan and microbial interactions. Nat. Rev. Microbiol, 4:710-6.
Dunn AK, Millikan DS, Adin DM, Bose JL, Stabb EV. New rfp- and pES213-derived tools for analyzing symbiotic Vibrio fischeri reveal patterns of infection and lux expression in situ. Appl Environ Microbiol. 2006 Jan;72(1):802-10.
Geszvain K, Visick KL.
Roles of bacterial regulators in the symbiosis between Vibrio fischeri and
Euprymna scolopes. Prog Mol Subcell Biol. 2006;41:277-90.
Giribet, G., A. Okusu, A.R. Lindgren, S.W. Huff, M. Schrödl, and M.K. Nishiguchi. 2006. Evidence for a clade composed of molluscs with serially repeated structures-monoplacophorans are related to chitons. Proc. Natl. Acad. Sci. USA, 103: 7723-7728.
Goodson, M. S., W. J. Crookes-Goodson, J. R. Kimbell, M. J. McFall-Ngai. 2006. Characterization and Role of p53 Family Members in the Symbiont-Induced Morphogenesis of the Euprymna scolopes Light Organ. Biol. Bull, 211:7-17.
Jones, B. W., Lopez, J. E., Huttenburg, J. and M. K. Nishiguchi. Population structure between environmentally transmitted vibrios and bobtail squids using nested clade analysi. 2006. Mol. Ecol., 15:4317-4329.
Jones BW, Nishiguchi MK. Differentially expressed
genes reveal adaptations between free-living and symbiotic niches of Vibrio
fischeri in a fully established mutualism. Can J
Microbiol. 2006 Dec;52(12):1218-27.
Kimbell, J. R., T. A. Koropatnick, M. J. McFall-Ngai. 2006. Evidence for the Participation of the Proteasome in Symbiont-Induced Tissue Morphogenesis. Biol. Bull, 211:1-6.
McFall-Ngai, M. J. 2006. Love the One You’re with: Vertebrate Guts Shape Their Microbiota. Cell, 127(2):247-249.
O'Shea TM, Klein AH, Geszvain K, Wolfe
AJ, Visick KL.Diguanylate
cyclases control magnesium-dependent motility of Vibrio fischeri. J
Bacteriol. 2006 Dec;188(23):8196-205
Reen, F. J., S. Almagro-Moreno, D. Ussery, E. F. Boyd. 2006. The genomic code: Inferring Vibrionaceae niche specialization. Nat. Rev. Micro., 4:697-704.
Sawabe T, Fukui Y, Stabb
EV. Simple conjugation and outgrowth procedures for
tagging vibrios with GFP, and factors affecting the stable expression of the
gfp tag. Lett Appl Microbiol. 2006 Nov;43(5):514-22.
Stabb, E.V.2006. The Vibrio fischeri-Euprymna scolopes light organ symbiosis. In F. L. Thompson, B. Austin and J. Swings (eds.), The biology of Vibrios. ASM Press, Washington D.C., pp. 204-218
Sycuro, L. K., E. G. Ruby, M. J. McFall-Ngai. 2006. Confocal microscopy of the light organ crypts in juvenile Euprymna scolopes reveals their morphological complexity and dynamic function in symbiosis. J. Morphol., 267:555-568.
Visick, K. L., E. G. Ruby. 2006. Vibrio fischeri and its host: it takes two to tango. Curr. Opin. Microbiol., 9:632-638.
Walker, E. L., Bose, J. G., and E. V. Stabb. 2006. Photolyase confers resistance to UV light but does not contribute to the symbiotic benefit of bioluminescence in Vibrio fischeri ES114. Appl. Environ. Microbiol., 72:6600-6606.
Yip ES, Geszvain K, DeLoney-Marino CR,
Visick KL. The symbiosis regulator rscS controls
the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio
fischeri. Mol Microbiol. 2006 Dec;62(6):1586-600.
Boletzky, S.v., M.K. Nishiguchi, J. Nabhitabhata, J. Nugranad. 2005. Idiosepius: Ecology, biology, and biogeography of a mini-maximalist. Phuket mar. biol. Cent. Res. Bull. 66: 11-22.
Burgents JE, Burnett LE,
Stabb EV, Burnett KG. Localization and
bacteriostasis of Vibrio introduced into the Pacific white shrimp,
Litopenaeus vannamei. Dev Comp Immunol. 2005;29(8):681-91.
Dunn, A. K., M. O. Martin, E. Stabb. 2005. Characterization of pES213, a small mobilizable plasmid from V. fischeri. Plasmid, 54:114-134.
Lindgren AR, Katugin ON, Amezquita E, Nishiguchi MK. Evolutionary relationships among squids of the family Gonatidae (Mollusca: Cephalopoda) inferred from three mitochondrial loci. Mol Phylogenet Evol. 2005 Jul;36(1):101-11.
Lupp, C., E. G. Ruby. 2005. Vibrio fischeri Uses Two Quorum-Sensing Systems for the Regulation of Early and Late Colonization Factors. J. Bacteriol., 187(11):3620-3629.
Galperin, M. Y. 2005. The vibrio that sheds light. Environmental Microbiology, 7(6):757–760.
Goodson, M. S., M. Kojadinovic, J. V. Troll, T. E. Scheetz, T. L. Casavant, M. B. Soares, M. J. McFall-Ngai. 2005. Identifying Components of the NF- B Pathway in the Beneficial Euprymna scolopes-Vibrio fischeri Light Organ Symbiosis. Appl Environ Microbiol, 71(11):6934–6946.
McFall-Ngai, M. J., J. I. Gordon. 2005. Experimental models of symbiotic host-microbial relationships: understanding the underpinnings of beneficence and the origins of pathogenesis. The Evolution of Bacterial Pathogens. H Seifert and V DiRita, eds., ASM Press, Washington, DC.
McFall-Ngai, M. J., B. Henderson, E. G. Ruby. 2005. The Influence of Cooperative Bacteria on Animal Host Biology. Cambridge University Press, Cambridge.
O'Shea TM, Deloney-Marino CR, Shibata S,
Aizawa S, Wolfe AJ, Visick KL. Magnesium promotes
flagellation of Vibrio fischeri. J Bacteriol. 2005
Mar;187(6):2058-65.
Ruby, E. G., M. Urbanowski, J. Campbell, A. Dunn, M. Faini, R. Gunsalus, P. Lostroh, C. Lupp, J. McCann, D. Millikan, A. Schaefer, E. Stabb, A. Stevens, K. Visick, C. Whistler, and E.P. Greenberg. 2005. Complete genome sequence ofVibrio fischeri: a symbiotic bacterium with pathogenic congeners. PNAS USA, 102:3004-09.
Stabb, E. V. 2005. Shedding Light on the Bioluminescence “Paradox”. ASM News, 71:223-229.
Thompson, F. L., Gevers, D., Thompson, C. C., Dawyndt, P., Naser, S., Hoste, B., Munn, C. B., and J. Swings. 2005. Phylogeny and molecular identification of Vibrios based on multilocus sequence analysis. Appl. Environ. Microbiol., 71:5107-5115.
Visick KL. Layers of signaling in a bacterium-host
association. J Bacteriol. 2005 Jun;187(11):3603-6.
Visick KL, Fuqua C.
Decoding microbial chatter: cell-cell communication in bacteria. J
Bacteriol. 2005 Aug;187(16):5507-19.
Yip ES, Grublesky BT, Hussa
EA, Visick KL. A novel, conserved cluster of genes promotes
symbiotic colonization and sigma-dependent biofilm formation by Vibrio
fischeri. Mol Microbiol. 2005 Sep;57(5):1485-98.
Crookes, W. J., L. L. Ding, Q. L. Huang, J. R. Kimbell, J. Horwitz, M. J. McFall-Ngai. 2004. Reflectins: the unusual proteins of squid reflective tissues. Science, 303(5655), 235-238.
Davidson, S. K., T. A. Koropatnick, R. Kossmehl, L. Sycuro, M. J. McFall-Ngai. 2004. NO means ‘yes’ in the squid-vibrio symbiosis: nitric oxide (NO) during the initial stages of a beneficial association. Cell Microbiol., 6(12):1139-51.
Jones, B. W. and M. K. Nishiguchi. 2004. Counterillumination in the Hawaiian bobtail squid, Euprymna scolopes (Mollusca: Cephalopoda). Mar. Biol., 144:1151-1155.
Kimbell J.R., M. J. McFall-Ngai. 2004. Symbiont-Induced Changes in Host Actin during the Onset of a Beneficial Animal-Bacterial Association. Appl. Environ. Microbiol., 70(3):1434-41.
Koropatnick, T. A., J. T. Engle, M. A. Apicella, E. V. Stabb, W. E. Goldman, M. J. McFall-Ngai. 2004. Microbial Factor-Mediated Development in a Host-Bacterial Mutualism. Science, 306(5699):1186-8.
Lindgren, A. R., G. Giribet, M. K. Nishiguchi. 2004. A combined approach to the phylogeny of Cephalopoda (Mollusca). Cladistics, 20:454–486.
Lupp, C., E. G. Ruby. 2004. Vibrio fischeri LuxS and AinS: Comparative Study of Two Signal Synthases. J. Bacteriol., 186(12):3873-81.
Millikan, D. S., E. G. Ruby. 2004. Vibrio fischeri Flagellin A Is Essential for Normal Motility and for Symbiotic Competence during Initial Squid Light Organ Colonization. J Bacteriol., 186(13):4315-25.
Nishiguchi, M.K. and B.W. Jones. 2004. Microbial biodiversity within the Vibrionaceae. In: J. Seckbach (ed.), Origins, evolution, and the biodiversity of microbial life, Cole-Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 531-548.
Nishiguchi, M. K., Lopez, J. E. and S. V. Boletzky. 2004. Enlightenment of old ideas from new investigations: more questions regarding the evolution of bacteriogenic light organs in squids. Evol. Develop., 6:41-49.
Nyholm, S. V., M. J. McFall-Ngai. 2004. The Winnowing: Establishing the Squid–Vibrio Symbiosis. Nat. Rev. Microbiol., 2(8):632-42.
Thompson, F. L., Iida, T., and J. Swings. 2004. Biodiversity of Vibrios. Microbiol. Mol. Biol. Rev., 68:403-431.
Ruby, E. G., B. Henderson, M. J. McFall-Ngai. 2004. We Get By with a Little Help from Our (Little) Friends. Science, 303:1305-1307.
Stabb EV, Butler
MS, Adin DM. Correlation between osmolarity and luminescence of symbiotic
Vibrio fischeri strain ES114. J Bacteriol.
2004 May;186(9):2906-8.
Wolfe AJ, Millikan DS, Campbell JM,
Visick KL. Vibrio fischeri sigma54 controls
motility, biofilm formation, luminescence, and colonization. Appl
Environ Microbiol. 2004 Apr;70(4):2520-4.
DeLoney-Marino, C.R., A. J. Wolfe, K. L. Visick. 2003. Chemoattraction of Vibrio fischeri to serine, nucleosides, and N-acetylneuraminic acid, a component of squid light-organ mucus. Appl. Environ. Microbiol., 69(12):7527-30.
Hartmann, B., P. N. Lee, Y. Y. Kang, S. Tomarev, H. G. de Couet, P. Callaerts. 2003. Pax6 in the sepiolid squid Euprymna scolopes: evidence for a role in eye, sensory organ and brain development. Mech. Dev., 120(2):177-83.
Kimbell, J. R., M. J. McFall-Ngai. 2003. The Squid-Vibrio Symbioses: From Demes to Genes. Integr. Comp. Biol., 43, 254-260.
Lee, P. N., P. Callaerts, H. G. De Couet, H. G. Martindale. 2003. Cephalopod Hox genes and the origin of morphological novelties. Nature, 424(6952):1061-5.
Lupp, C., M. Urbanowski, E. P. Greenberg, E. G. Ruby. 2003. The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host. Mol. Microbiol., 50(1):319-331.
McCann, J., E. V. Stabb, D. S. Millikan, E. G. Ruby. 2003. Population dynamics of Vibrio fischeri during infection of Euprymna scolopes. Appl. Environ. Microbiol., 69(10), 5928-5934.
Millikan, D. S., E. G. Ruby. 2003. FlrA, a sigma54-dependent transcriptional activator in Vibrio fischeri, is required for motility and symbiotic light-organ colonization. J. Bacteriol., 185(12), 3547-3557.
Miyamoto, C. M., P. V. Dunlap, E. G. Ruby, E. A. Meighen. 2003. LuxO controls luxR expression in Vibrio harveyi: evidence for a common regulatory mechanism in Vibrio. Mol. Microbiol., 48(2), 537-548.
Nishiguchi, M. K. and V. S. Nair. 2003. Evolution of symbiosis in the Vibrionaceae: a combined approach using molecules and physiology. Int. J. Syst. Evol. Microbiol., 53:2019-2026.
Nyholm, S. V., M. J. McFall-Ngai. 2003. Dominance of Vibrio fischeri in secreted mucus outside the light organ of Euprymna scolopes: the first site of symbiont specificity. Appl. Environ. Microbiol., 69(7), 3932-3937.
Stabb, E. V., E. G. Ruby. 2003. Contribution of pilA to competitive colonization of the squid Euprymna scolopes by Vibrio fischeri. Appl. Environ. Microbiol., 69(2), 820-826.
Whistler, C. A., E. G. Ruby. 2003. GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host. J. Bacteriol., 185(24), 7202-7212.
Callaerts, P., P. N. Lee, B. Hartmann, C. Farfan, D. W. Choy, K. Ikeo, K. F. Fischbach, W. J. Gehring, H.G. de Couet. 2002. HOX genes in the sepiolid squid Euprymna scolopes: implications for the evolution of complex body plans. Proc. Natl. Acad. Sci. U S A, 99(4):2088-93.
DeLoney, C. R., T. M. Bartley, K. L. Visick. 2002. Role for phosphoglucomutase in Vibrio fischeri-Euprymna scolopes symbiosis. J. Bacteriol., 184(18):5121-9.
Fidopiastis, P. M., C. M. Miyamoto, M. G. Jobling, E. A. Meighen, E. G. Ruby. 2002. LitR, a new transcriptional activator in Vibrio fischeri, regulates luminescence and symbiotic light organ colonization. Mol. Microbiol., 45(1), 131-143.
Foster, J. S., S. von Boletzky, M. J. McFall-Ngai. 2002. A Comparison of the Light Organ Development of Sepiola robusta naef and Euprymna scolopes berry (CEPHALOPODA: SEPIOLIDAE). Bull. Marine Science, 70(1), 141-153.
Kimbell, J. R., McFall-Ngai, M. J., and G. K. Roderick. 2002. Two genetically distinct populations of bobtail squid, Euprymna scolopes, exist on the island of Oahu. Pac. Sci., 56(3):347-355.
Lupp, C., R. E. Hancock, E. G. Ruby. 2002. The Vibrio fischeri sapABCDF locus is required for normal growth, both in culture and in symbiosis. Arch. Microbiol., 179(1), 57-65.
McFall-Ngai, M. J. 2002. Unseen forces: the influence of bacteria on animal development. Dev. Biol., 242(1), 1-14.
Millikan, D. S., E. G. Ruby. 2002. Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects. Appl. Environ. Microbiol., 68(5), 2519-2528.
Nishiguchi, M. K. 2002. Host-symbiont recognition in the environmentally transmitted sepiolid squid-Vibrio mutualism. Microb. Ecol., 44(1):10-8.
Nishiguchi MK. The use of physiological data to corroborate cospeciation events in symbiosis. EXS. 2002;(92):237-45.
Nyholm, S. V., B. Deplancke, H. R. Gaskins, M. A. Apicella, M. J. McFall-Ngai. 2002. Roles of Vibrio fischeri and nonsymbiotic bacteria in the dynamics of mucus secretion during symbiont colonization of the Euprymna scolopes light organ. Appl. Environ. Microbiol., 68(10), 5113-5122.
Stabb, E. V., E. G. Ruby. 2002. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods Enzymol., 358, 413-426.
Aeckersberg, F., C. Lupp, B. Feliciano, E. G. Ruby. 2001. Vibrio fischeri outer membrane protein OmpU plays a role in normal symbiotic colonization. J. Bacteriol., 183(22), 6590-6597.
McFall-Ngai, M. J. 2001. Identifying 'prime suspects': symbioses and the evolution of multicellularity. Comp. Biochem. Physiol. B. Biochem. Mol. Biol., 129(4), 711-723.
Nishiguchi, M.K. 2001. Co-evolution of symbionts and hosts: The sepiolid-Vibrio model. In: J. Seckbach (ed.), Symbiosis: Mechanisms and Model Systems, Cole-Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 757-774.
Stabb, E. V., K. A. Reich, E. G. Ruby. 2001. Vibrio fischeri genes hvnA and hvnB encode secreted NAD(+)-glycohydrolases. J. Bacteriol., 183(1), 309-317.
Stabb, E. V., K. L. Visick, D. S. Millikan, A. A. Corcoran, L. Gilson, S. V. Nyholm, M. J. McFall-Ngai, E. G. Ruby. 2001. The Vibrio fischeri-Euprymna scolopes symbiosis: A model marine animal-bacteria interaction. pp. 269-277 In N.K. Saxena (ed.), Recent Advances in Marine Science and Technology, 2000. PACON International, Honolulu, Hawaii.
Timmins, G. S., S. K. Jackson, H. M. Swartz. 2001. The evolution of bioluminescent oxygen consumption as an ancient oxygen detoxification mechanism. J. Mol. Evol., 52(4):321-32.
Visick, K. L., L. M. Skoufos. 2001. Two-component sensor required for normal symbiotic colonization of Euprymna scolopes by Vibrio fischeri. J. Bacteriol., 183(3):835-42.
Callahan, S. M., P. V. Dunlap. 2000. LuxR- and acyl-homoserine-lactone-controlled non-lux genes define a quorum-sensing regulon in Vibrio fischeri. J. Bacteriol., 182(10):2811-22.
Claes, M. F., P. V. Dunlap. 2000. Aposymbiotic culture of the sepiolid squid Euprymna scolopes: role of the symbiotic bacterium Vibrio fischeri in host animal growth, development, and light organ morphogenesis. J. Exp. Zool., 286(3):280-96.
Doino Lemus, J., M. J. McFall-Ngai. 2000. Alterations in the proteome of the Euprymna scolopes light organ in response to symbiotic Vibrio fischeri. Appl. Environ. Microbiol., 66(9), 4091-4097.
Foster, J. S., M. A. Apicella, M. J. McFall-Ngai. 2000. Vibrio fischeri lipopolysaccharide induces developmental apoptosis, but not complete morphogenesis, of the Euprymna scolopes symbiotic light organ. Dev. Biol., 226(2), 242-254.
Graf, J., E. G. Ruby. 2000. Novel effects of a transposon insertion in the Vibrio fischeri glnD gene: defects in iron uptake and symbiotic persistence in addition to nitrogen utilization. Mol. Microbiol., 37(1), 168-179.
Hirsch, A. M., M. J. McFall-Ngai. 2000. Fundamental Concepts in Symbiotic Interactions: Light and Dark, Day and Night, Squid and Legume. Journal of Plant Growth Regulation, 19(2), 113-130.
McFall-Ngai, M. J. 2000. Negotiations between animals and bacteria: the 'diplomacy' of the squid-vibrio symbiosis. Comp. Biochem. Physiol. A. Mol. Integr. Physiol., 126(4), 471-480.
McFall-Ngai, M. J., E. G. Ruby. 2000. Developmental biology in marine invertebrate symbioses. Curr. Opin. Microbiol., 3(6), 603-607.
Nishiguchi, M. K. 2000. Temperature affects species distribution in symbiotic populations of Vibrio spp. Appl. Environ. Microbiol. 66(8): 3550-3555.
Nyholm, S. V., E. V. Stabb, E. G. Ruby, M. J. McFall-Ngai. 2000. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proc. Natl. Acad. Sci. U S A, 97(18), 10231-10235.
Proctor L. M., R. P. Gunsalus. 2000. Anaerobic respiratory growth of Vibrio harveyi, Vibrio fischeri and Photobacterium leiognathi with trimethylamine N-oxide, nitrate and fumarate: ecological implications. Environ. Microbiol., 2(4):399-406.
Visick, K. L., J. Foster, J. Doino, M. J. McFall-Ngai, E. G. Ruby. 2000. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ. J. Bacteriol., 182(16), 4578-4586.
Visick, K. L., M. J. McFall-Ngai. 2000. An exclusive contract: specificity in the Vibrio fischeri-Euprymna scolopes partnership. J. Bacteriol., 182(7), 1779-1787.
Bower, J. R., M. P. Seki, R. E. Young, K. A. Bigelow, J. Hirota, P. Flament. 1999. Cephalopod paralarvae assemblages in Hawaiian Island waters. Mar. Ecol. Prog. Ser., 185, 103-212.
Fidopiastis, P. M., H. Sorum, E. G. Ruby. 1999. Cryptic luminescence in the cold-water fish pathogen Vibrio salmonicida. Arch. Microbiol., 171(3), 205-209.
McFall-Ngai, M. J. 1999. Consequences of evolving with bacterial symbionts: Insights from the Squid-Vibrio associations. Annu. Rev. Ecol. Syst., 30:235-56.
Ruby, E. G. 1999. The Euprymna scolopes-Vibrio fischeri symbiosis: a biomedical model for the study of bacterial colonization of animal tissue. J. Mol. Microbiol. Biotechnol., 1(1), 13-21.
Ruby, E. G. 1999. Ecology of a benign “infection”: colonization of the squid luminous organ by Vibrio fischeri. pp. 217-231 In Microbioal Ecology and Infectious Disease, E. Rosenberg (ed. ASM, Washington DC).
Ruby, E. G., M. J. McFall-Ngai. 1999. Oxygen-utilizing reactions and symbiotic colonization of the squid light organ by Vibrio fischeri. Trends Microbiol., 7(10), 414-420.
Small, A. L., M. J. McFall-Ngai. 1999. Halide peroxidase in tissues that interact with bacteria in the host squid Euprymna scolopes. J. Cell. Biochem., 72(4), 445-457.
Fidopiastis, P. M., S. von Boletzky, E. G. Ruby. 1998. A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola. J. Bacteriol., 180(1), 59-64.
Foster, J. S., M. J. McFall-Ngai. 1998. Induction of apoptosis by cooperative bacteria in the morphogenesis of host epithelial tissues. Dev. Genes Evol., 208(6), 295-303.
Graf, J., E. G. Ruby. 1998. Host-derived amino acids support the proliferation of symbiotic bacteria. Proc Natl Acad Sci U S A, 95(4), 1818-1822.
Lamarcq, L. H., M. J. McFall-Ngai. 1998. Induction of a gradual, reversible morphogenesis of its host's epithelial brush border by Vibrio fischeri. Infect. Immun., 66(2), 777-785.
McFall-Ngai, M. J. 1998. The Development of Cooperative Associations Between Animals and Bacteria: Establishing Detente Among Domains. American Zoologist, 38(4), 593-608.
McFall-Ngai, M. J. 1998. Pioneering the Squid-Vibrio Model. ASM, 64(11), 639-645.
McFall-Ngai, M., C. Brennan, V. Weis, L. Lamarcq. 1998. Mannose adhesin-glycan interactions in the Euprymna scolopes-Vibrio fischeri symbiosis, p. 273-276. In Le Gal and Halvorson (ed.), New Developments in Marine Biotechnology. Plenum Press, New York.
McFall-Ngai, M. J., E. G. Ruby. 1998. Sepiolids and Vibrios: When First They Meet. BioScience, 48(4), 257-265.
Montgomery, M. K., M. J. McFall-Ngai. 1998. Late postembryonic development of the symbiotic light organ of Euprymna scolopes (Cephalopoda: Sepiolidae). Biol. Bull., 195(3), 326-336.
Nishiguchi, M. K., E. G. Ruby, M. J. McFall-Ngai. 1998. Competitive dominance among strains of luminous bacteria provides an unusual form of evidence for parallel evolution in Sepiolid squid-vibrio symbioses. Appl. Environ. Microbiol., 64(9), 3209-3213.
Nyholm, S. V., M. J. McFall-Ngai. 1998. Sampling the light-organ microenvironment of Euprymna scolopes: description of a population of host cells in association with the bacterial symbiont Vibrio fischeri. Biol. Bull., 195(2), 89-97.
Ruby, E. G., K. Lee. 1998. The Vibrio fischeri-Euprymna scolopes Light Organ Association: Current Ecological Paradigms. Appl. Environ. Microbiol., 64(3), 805-812.
Visick, K. L., E. G. Ruby. 1998. The periplasmic, group III catalase of Vibrio fischeri is required for normal symbiotic competence and is induced both by oxidative stress and by approach to stationary phase. J. Bacteriol., 180(8), 2087-2092.
Hanlon, R. T., M. F. Claes, S. E. Ashcraft, P. V. Dunlap. 1997. Laboratory Culture of the Sepiolid squid Euprymna scolopes: A model system for bacteria-animal symbiosis. Biol. Bull., 192:364-374.
Nishiguchi, M.K. and L.J. Goff. 1997. Salinity effects on growth, and the regulation and production of DMSP lyase in several species of macroalgae from the Monterey Bay. Mar. Ecol. Prog. Ser. 28:576-81.
Nishiguchi, M. K., E. G. Ruby, M. J. McFall-Ngai. 1997. Phenotypic bioluminescence as an indicator of competitive dominance in the Euprymna-Vibrio symbiosis, p. 123-126. In J. W. Hastings, L. J. Kricka, and P. E. Stanley (ed.), Bioluminescence and Chemiluminescence. John Wiley and Sons, New York.
Reich, K. A., T. Biegel, G. K. Schoolnik. 1997. The light organ symbiont Vibrio fischeri possesses two distinct secreted ADP-ribosyltransferases. J. Bacteriol., 179(5):1591-7.
Visick, K. L., E. G. Ruby. 1997. New genetic tools for use in the marine bioluminescent bacterium Vibrio fischeri, p. 119-122. In J. W. Hastings, L. J. Kricka, and P. E. Stanley (ed.), Bioluminescence and Chemiluminescence. John Wiley and Sons, New York.
Anderson, R. C., J. A. Mather. 1996. Escape responses of Eupyrmna scolopes Berry, 1911 (Cephalopoda: Sepiolidae). J. Moll. Stud., 62:543-545.
Boettcher, K. J., E. G. Ruby, M. J. McFall-Ngai. 1996. Bioluminescence in the symbiotic squid Euprymna scolopes is controlled by a daily biological rhythm, J. Comp. Physiol., 179:65-73.
Kuo, A., S. M. Callahan, P. V. Dunlap. 1996. Modulation of Luminescence Operon Expression by N-Octanoyl-L-Homoserine Lactone in ainS Mutants of Vibrio fischeri. J. Bacteriol., 178(4), 971–976.
Reich, K. A., G. K. Schoolnik. 1996. Halovibrin, secreted from the light organ symbiont Vibrio fischeri, is a member of a new class of ADP-ribosyltransferases. J. Bacteriol., 178(1):209-15.
Ruby, E. G. 1996. Lessons from a cooperative, bacterial-animal association: the Vibrio fischeri-Euprymna scolopes light organ symbiosis. Annu. Rev. Microbiol., 50, 591-624.
Visick, K. G., E. G. Ruby. 1996. Construction and symbiotic competence of a luxA-deletion mutant of Vibrio fischeri. Gene, 175(1-2), 89-94.
Weis, V. M., A. L. Small, M. J. McFall-Ngai. 1996. A peroxidase related to the mammalian antimicrobial protein myeloperoxidase in the Euprymna-Vibrio mutualism. Proc. Natl. Acad. Sci. U S A, 93(24), 13683-13688.
Boettcher, K. J., E. G. Ruby. 1995. Detection and quantification of Vibrio fischeri autoinducer from symbiotic squid light organs. J. Bacteriol., 177(4), 1053-1058.
Doino, J. A., M. J. McFall-Ngai. 1995. A Transient Exposure to Symbiosis-Competent Bacteria Induces Light Organ Morphogenesis in the Host Squid. Bio. Bull., 189:347-355.
Dunlap, P. V., K. Kita-Tsukamoto, J. B. Waterbury, S. M. Callahan. 1995. Isolation of a visibly luminous variant of Vibrio fischeri strain ES114 from the sepiolid squid Euprymna scolopes. Arch. Microbiol., 164:194-202.
Lee, K., E. G. Ruby. 1995. Symbiotic Role of the Viable but Nonculturable State of Vibrio fischeri in Hawaiian Coastal Seawater. Appl. Environ. Microbiol., 61(1), 278-283.
Montgomery, M. K., M. J. McFall-Ngai. 1995. The inductive role of bacterial symbionts in the morphogenesis of a squid light organ. Amer. Zool., 35:372-380.
Nishiguchi, M.K., B.
Duval, and D.P. Moser. 1995. Analysis of dimethylsulfoniopropionate
(DMSP) from Phaeocystis pouchetii in the waters of McMurdo Sound,
Antarctica. Antarct. J. US 2:6-11.
Nishiguchi, M.K. and L.J. Goff. 1995.
Isolation, Purification and Characterization of DMSP Lyase
(Dimethylsulfoniopropionate) from Polysiphonia paniculata,
Montagne.
J. Phycol.
31:567-74.
Boettcher, K. J., E. G. Ruby. 1994. Occurrence of plasmid DNA in the sepiolid squid symbiont Vibrio fischeri. Current Microbiology, 29:279-286.
Graf, J., P. V. Dunlap, E. G. Ruby. 1994. Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri. J. Bacteriol., 176(22), 6986-6991.
Lee, K., E. G. Ruby. 1994. Competition between Vibrio fischeri strains during initiation and maintenance of a light organ symbiosis. J. Bacteriol., 176(7), 1985-1991.
Lee, K., E. G. Ruby. 1994. Effect of the Squid Host on the Abundance and Distribution of Symbiotic Vibrio fischeri in Nature. Appl. Envir. Microbiol., 60(5), 1565-1571.
McFall-Ngai, M. J. 1994. Animal-bacterial interactions in the early life history of marine invertebrates: The Euprymna scolopes/Vibrio fischeri symbiosis, Amer. Zool. 1994. 34:554-561.
Montgomery, M. K., M. J. McFall-Ngai. 1994. Bacterial symbionts induce host organ morphogenesis during early postembryonic development of the squid Euprymna scolopes. Development, 120(7), 1719-1729.
Gillis, A. 1993. Sea dwellers and their sidekicks. BioScience, 43(9): 598-602.
Haygood, M. 1993. Light organ symbioses in fishes. Crit. Rev. in Micro., 19(4), 191-216.
Montgomery, M. K., M. J. McFall-Ngai. 1993. Embryonic development of the light organ of the sepiolid squid Euprymna scolopes Berry. Biol. Bull., 184:296-308.
Ruby, E. G., L. M. Asato. 1993. Growth and flagellation of Vibrio fischeri during initiation of the sepiolid squid light organ symbiosis. Arch. Microbiol., 159(2), 160-167.
Small, A. L., M. J. McFall-Ngai. 1993. Changes in the oxygen environment of a symbiotic squid light organ in response to infection by its luminous bacterial symbiont. Amer. Zool., 33, 61A.
Tomarev, S. I., R. D. Zinovieva, V. M. Weis, A. B. Chepelinsky, J. Piatigorsky, M. J. McFall-Ngai. 1993. Abundant mRNAs in the squid light organ encode proteins with a high similarity to mammalian peroxidases. Gene, 132(2), 219-226.
Weiss, V. M., M. K. Montgomery, M. J. McFall-Ngai. 1993. Enhanced production of ALDH-like protein in the bacterial light organ of the sepiolid squid Euprymna scolopes. Biol. Bull., 184:309-321.
Croll, D.A., M.K. Nishiguchi. S. Kaupp, and G.N. Somero (1992). The effect of pressure on LDH function in diving mammals and birds. Physiol. Zool. 65:1022-27.
Gray, K. M., E. P. Greenberg. 1992. Physical and functional maps of the luminescence gene cluster in an autoinducer-deficient Vibrio fischeri strain isolated from a squid light organ. J. Bacteriol., 174(13):4384-90.
Hensey, S., M. J. McFall-Ngai. 1992. A surface peptide of the bacterium Vibrio fischeri plays a key role in specificity and recognition in the symbiosis with the squid Euprymna scolopes. Amer. Zool., 32, 32A.
Lee, K., E. G. Ruby. 1992. Detection of the Light Organ Symbiont, Vibrio fischeri, in Hawaiian Seawater by Using lux Gene Probes. Appl. Envir. Microbiol., 58(3), 942-947.
Montgomery, M. K., M. J. McFall-Ngai. 1992. The muscle-derived lens of a squid bioluminescent organ is biochemically convergent with the ocular lens. Evidence for recruitment of aldehyde dehydrogenase as a predominant structural protein. J. Biol. Chem., 267(29), 20999-21003.
Nishiguchi, M.K. and G.N. Somero. 1992. Temperature- and concentration- dependence of compatibility of the organic osmolyte B-dimethylsulfoniopropionate. Cryobiol. 129:118-24.
Ruby, E. G., M. J. McFall-Ngai. 1992. A squid that glows in the night: development of an animal-bacterial mutualism. J. Bacteriol., 174(15), 4865-4870.
Saffo, M. 1992. Invertebrates in endosymbiotic associations. Am. Zool., 32:557-565.
Farmer, J. J. and F. W. Hickman-Brenner. The genera Vibrio and Photobacterium. In: Balows, A., Truper, H. G., Dworkin, M., Harder, W., and K. H. Schleifer, ed. The prokaryotes. 2nd ed. New York, N.Y: Springer-Verlag; 1991. pp. 2952–3011.
Hiraki, K., T. Hamanaka, M. Seidou, Y. Kito. 1991. Conformation changes of cuttlefish (Euprymna morsei) rhodopsin following photoconversion. Biochim. Biophys. Acta., 1077(3):355-61.
McFall-Ngai, M. J., E. G. Ruby. 1991. Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism. Science, 6;254(5037):1491-4.
Boettcher, K. J., E. G. Ruby. 1990. Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes. J. Bacteriol., 172(7), 3701-3706.
McFall-Ngai, M. J., M. K. Montgomery. 1990. The anatomy and morphology of the adult bacterial light organ of Euprymna scolopes Berry (Cephalopoda: Sepiolidae). Biol. Bull., 179:332-339.
Ramesh, A., B. B. Loganathan, K. Venkateswaran. 1990. Ecological dynamics of marine luminous bacteria. J. Basic. Micro., 30:689-703.
Wei, S. L. and R.E. Young. 1989. Development of symbiotic bioluminescence in a nearshore cephalopod, Euprymna scolopes. Mar. Biol., 103:541-546.
Nguyen, T., M.K. Nishiguchi, M. Mohler, and S. Hollenbach. 1988. Pharmaceutical formulations of Tissue Plasminogen Activator (TPA) for the prevention of post-surgical adhesion. J. Throm. 10:132-37.
Shears, J. S. 1988. The use of a sand-coat in relation to feeding and diel activity in the sepiolid squid Euprymna scolopes. Malacologia, 29:121-133.
Moynihan, M. 1983. Notes on the behavior of Euprymna scolopes (Cephalopoda: Sepiolidae). Behavior, 85:25-41.
Singley, C. T. Euprymna scolopes in Cephalopod Life Cycles. Vol. 1. 1983. 69-74. Academic Press: London.
Singley, C. T. 1982. Histochemistry and fine structure of the ectodermal epithelium of the sepiolid squid Eupyrmna scolopes. Malacologia, 23:177-192.
Ruby, E. G. Greenberg, E. P., and J. W. Hastings. 1980. Planktonic marine luminous bacteria: species distribution in the water column. Appl. Environ. Microbiol., 39:302-306
Ruby, E. G. and K. H. Nealson. 1978. Seasonal changes in the species composition of luminous bacteria in nearshore seawater. Limnol. Oceanogr., 23:530-533.
Fitzgerald, J. M. 1977. Classification of luminous bacteria from the light organ of the Australian Pinecone Fish, Cleidopus gloriamaris. Arch. Microbiol., 112:153-156.
Reichelt, J. L., Nealson, K., and J. W. Hastings. The specificity of symbiosis: Pony fish and luminescent bacteria. Arch. Microbiol., 112:157-161.
Ruby, E. G. and K. H. Nealson. 1977. A luminous bacterium that emits yellow light. Science, 196:432-434.
Ruby, E. G. and K. H. Nealson. 1976. Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica: a model of symbiosis based on bacterial studies. Biol. Bull., 151:574-586.
Reichelt, J. L. and P. Baumann. 1973. Taxonomy of the marine, luminous bacteria. Arck. Mikrobiol., 94:283-330.
Arnold, J. M., C. T. Singly, L. D. Williams-Arnold. 1972. Embryonic development and post-hatching survival of the sepiolid squid Euprymna scolopes under laboratory conditions. Veliger, 14:361-364.
Baumann, P., Baumann, L. and M. Mandel. 1971. Taxonomy of marine bacteria: the genus Beneckea. J. Bacteriol., 107: 268-294.
Choe, S. On the eggs, rearing, habits of the fry, and growth of some Cephalopoda. Bull. Mar. Sci., 16:330-348.
Choe, S. and Y. Oshima. 1963. Rearing of cuttlefishes and squids. Nature, 197:307.
Spencer, R. 1955. The taxonomy of certain luminous bacteria. J. Gen. Microbiol., 13:111-118.
Berry, S. S. 1914. The Cephalopoda of the Hawaiian Islands. Bulletin of the Bureau of Fisheries, 32:257-273;311-315.
Berry, S. S. 1912. Some new Hawaiian Cephalopods. Proceedings of the U.S. National Museum, 45:563-566.
Sternberg, G. M. 1892. A Manual of Bacteriology. William Wood and Co., New York; pp. 137-8;662-3.